xstreme meme suite的八卦，YOUTUBE、PINTEREST和 Yahoo名人娛樂都在討論：

#11. Comprehensive motif analysis of biological sequence datasets

Like MEME-ChIP, XSTREME performs two types of de novo motif discovery, and also performs motif enrichment analysis of the input sequences using ...

#12. memesuite/memesuite - Docker Image - Docker Hub

The MEME Suite Docker container is available under a limited, ... run all of the MEME Suite command line tools including, MEME, MAST, STREME, XSTREME etc.

#13. The MEME Suite: Motif-Based Sequence Analysis Tools

The MEME Suite allows you to:Discover motifs using MEME, STREME, XSTREME, MEME-ChIP, GLAM2, or MoMo on groups of related DNA, RNA or protein sequences.

#14. Meme - :: Anaconda.org

License: Custom; Home: http://meme-suite.org; 100870 total downloads; Last upload: 6 months and 20 days ... conda install -c "bioconda/label/cf201901" meme ...

#15. XSTREME: Comprehensive motif analysis of biological ...

XSTREME is similar to the MEME-ChIP tool, but expands upon its capabilities in several ways. Like MEME-ChIP, XSTREME performs two types of ...

#16. Motif Searching - Babraham Bioinformatics

MEME Suite. MEME Motif Discovery. MEME. Original motif enrichment program; PWM based motifs; Long ungapped motifs, sensitive search, slow! STREME/XSTREME.

#17. uci-cbcl/EXTREME: An online EM implementation of ... - GitHub

An online EM implementation of the MEME model for fast motif discovery in large ChIP-Seq and DNase-Seq Footprinting data - GitHub - uci-cbcl/EXTREME: An ...

#18. The MEME Suite - PMC - NCBI

The core of the suite is the meme motif discovery algorithm, which finds motifs in unaligned collections of DNA, RNA and protein sequences (1).

#19. Charles E. Grant - Semantic Scholar

MEME Suite : tools for motif discovery and searching · T. Bailey, M. Bodén, ... XSTREME: Comprehensive motif analysis of biological sequence datasets.

#20. Efficient computation of motif discovery on Intel Many ...

EXTREME is a recent improvement of MEME which applies the online EM algorithm to discover motifs and uses the same model as MEME. BoBro [18] is ...

#21. EXTREME: an online EM algorithm for motif discovery

Results: We present EXTREME, a motif discovery algorithm designed to find DNA-binding motifs in ChIP-Seq and DNase-Seq data. Unlike MEME, which uses the ...

#22. ‪Charles E. Grant‬ - ‪Google 学术搜索‬

MEME Suite: tools for motif discovery and searching. TL Bailey, M Boden, FA Buske, ... XSTREME: Comprehensive motif analysis of biological sequence datasets.

#23. How to fulfill submission form with data upload using Selenium?

Chrome(service=Service(ChromeDriverManager().install())) driver.get("https://meme-suite.org/meme/tools/xstreme") k ...

#24. Combination of Experimental and Bioinformatic Approaches ...

All the sequences from each panning round were subjected to XTREME software [21], a part of MEME Suite [27]. Biomolecules 13 00310 g004 550. Figure 4. Heatmaps ...

#25. motif matching, comparison, and de novo discovery using the ...

memes works by detecting a local install of the MEME suite, running the commands, then importing the results directly into R. Installation. Bioconductor. memes ...

#26. Meme Suite 同じスイートの紹介 - Academic Accelerator

orgであり、広く使用されているMEME Suite ofシーケンス分析ツールと完全に統合されており、非営利目的で同じWebサイトから無料でダウンロードできます。 XSTREME: ...

#27. publications - of Timothy L. Bailey

... “XSTREME: Comprehensive motif analysis of biological sequence datasets”, ... “The MEME Suite”, Nucleic Acids Research, W1:W39–W49, 2015.

#28. ‪Charles E. Grant‬ - ‪Google Scholar‬

MEME Suite: tools for motif discovery and searching. TL Bailey, M Boden, FA Buske, ... XSTREME: Comprehensive motif analysis of biological sequence datasets.

#29. Coexpression signatures identify novel regulators of ... - OSF

Motif analysis. We performed de novo motif analysis for each transcription factor's set of coexpressed TEs using xstreme via meme-suite ...

#30. Intron-capture RNA-seq reveals the landscape of intronic ...

... we used MEME (https://meme-suite.org/meme/) to analyze the 15 sequences from ... To discover the motif inside the introns, we used the XSTREME algorithm ...

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#32. Regulatory dynamics distinguishing desiccation tolerance ...

We utilized the Motif Discovery and Enrichment Analysis (XSTREME) algorithm from Multiple Em for Motif Elicitation (MEME) to identify motifs ...

#33. In silico analysis of regulatory elements of the bldD gene of ...

The MEME algorithm revealed five motifs (MtS1-5), of which Motif 1 (MtS1) has ... C. E. Grant and T. L. Bailey, “XSTREME: Comprehensive motif analysis of ...

#34. Elon Musk's Political Spectrum Meme Is Not Quite Accurate

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#35. RBFOX2 modulates a metastatic signature of alternative ...

RBFOX2 motif (GCWUG) was manually added to the motif collection of RNA-binding proteins in the XSTREME database (Ray2013 Homo sapiens). The ...

#36. M1ARegpred: Epitranscriptome Target Prediction of N1 ...

In addition, motif search and gene ontology enrichment analysis were performed ... substrates using XSTREME with default parameters from the MEME suit [57].

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#38. Reactivity Graph Yields Interpretable IgM Repertoire ... - MDPI

of 20 sequences and larger using the XSTREME algorithm from the MEME suit (https: · //meme-suite.org/, accessed on 13 December 2022 [31]), ...

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proteolytic digestion and extreme pH and protect the parasite under ... XSTREME software of the MEME suite [35] was used to scan the 136 VSP.

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#43. Enhancer RNA Expression in Response to Glucocorticoid ...

Differential motif enrichment was performed using XSTREME version ... analysis using MEME-ChIP [65] identified SPI1/PU.1 and AP1 motifs in ...

#44. In silico analysis of regulatory elements of ... - Research Square

Using MEME software; conserved motifs for bldD genes of 13 ... C. E. Grant and T. L. Bailey, “XSTREME: Comprehensive motif analysis of ...

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#46. A cryptic transcription factor regulates Caulobacter adhesin ...

... the XSTREME algorithm within the MEME Suite [33]. ... C) DNA sequence motif enriched in RtrC ChIP-seq peaks identified by XSTREME [33].

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#56. Data - Europe PMC

... groups the Xstreme algorithm was used (Grant and Bailey, 2021). ... Drosophila Databases represented by the MEME SUITE tool were used as ...

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#59. MEME SUITE: tools for motif discovery and searching - Scite

The popular MEME motif discovery algorithm is now complemented by the GLAM2 algorithm which allows discovery of motifs containing gaps. Three sequence scanning ...

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#64. MEME Suite: Motif-based sequence analysis tools - YouTube

MEME discovers novel, ungapped motifs (recurring, fixed-length patterns) in your sequences (sample output from sequences).

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#69. Memes: A motif analysis environment in R using tools ... - PLOS

By providing an interface between the MEME Suite and R, memes allows for improved motif analysis workflows and easy access to a wide range of ...

#70. MEME SUITE: tools for motif discovery and searching

Three sequence scanning algorithms—MAST, FIMO and. GLAM2SCAN—allow scanning numerous DNA and protein sequence databases for motifs discovered by ...

#71. memes: motif matching, comparison, and de novo discovery using ...

Suite. Version 1.4.1. Description A seamless interface to the MEME Suite family of tools for motif analysis. 'memes' provides data aware utilities for using ...

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